CoCoLIT
ControlNet-Conditioned Latent Image Translation for MRI to Amyloid PET Synthesis

University College London, University of Catania, University of Messina
*Joint First Authors, Joint Senior Authors
Methodology Visualization GIF

Abstract

Synthesizing amyloid PET scans from the more widely available and accessible structural MRI modality offers a promising, cost-effective approach for large-scale Alzheimer's Disease (AD) screening. This is motivated by evidence that, while MRI does not directly detect amyloid pathology, it may nonetheless encode information correlated with amyloid deposition that can be uncovered through advanced modeling. However, the high dimensionality and structural complexity of 3D neuroimaging data pose significant challenges for existing MRI-to-PET translation methods. Modeling the cross-modality relationship in a lower-dimensional latent space can simplify the learning task and enable more effective translation. As such, we present CoCoLIT (ControlNet-Conditioned Latent Image Translation), a diffusion-based latent generative framework that incorporates three main innovations: (1) a novel Weighted Image Space Loss (WISL) that improves latent representation learning and synthesis quality; (2) a theoretical and empirical analysis of Latent Average Stabilization (LAS), an existing technique used in similar generative models to enhance inference consistency; and (3) the introduction of ControlNet-based conditioning for MRI-to-PET translation. We evaluate CoCoLIT's performance on publicly available datasets and find that our model significantly outperforms state-of-the-art methods on both image-based and amyloid-related metrics. Notably, in amyloid-positivity classification, CoCoLIT outperforms the second-best method with improvements of +10.5% on the internal dataset and +23.7% on the external dataset. Click here to read the full paper!

Installation & Usage

Our tool requires T1w MRIs to be preprocessed using TurboPrep. Once preprocessed, installation and usage are simple.

# 1. Install via pip

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# 2. Run inference

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For Research Use Only. This tool is not intended for clinical or commercial use. Its output is for research purposes only and should not be used to inform clinical decisions.

BibTeX

@inproceedings{sargood2025cocolit,
  title     = {{CoCoLIT}: ControlNet-Conditioned Latent Image Translation for {MRI} to Amyloid {PET} Synthesis},
  author    = {Sargood, Alec and Puglisi, Lemuel and Cole, James H. and Oxtoby, Neil P. and Rav{\`i}, Daniele and Alexander, Daniel C.},
  booktitle = {To Appear},
  year      = {2025},
  note      = {arXiv preprint}
}